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B
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C
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D
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E
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F
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G
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H
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I
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L
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M
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N
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O
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P
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R
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S
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T
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U
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V
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W
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X
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Y
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Z
A
add_convolution_module() (in module diluvian.network)
add_mask() (diluvian.regions.Region method)
add_unet_layer() (in module diluvian.network)
augment_subvolume() (diluvian.volumes.ContrastAugmentGenerator method)
(diluvian.volumes.GaussianNoiseAugmentGenerator method)
(diluvian.volumes.MaskedArtifactAugmentGenerator method)
(diluvian.volumes.MirrorAugmentGenerator method)
(diluvian.volumes.MissingDataAugmentGenerator method)
(diluvian.volumes.PermuteAxesAugmentGenerator method)
(diluvian.volumes.SubvolumeAugmentGenerator method)
augment_subvolume_generator() (in module diluvian.training)
B
BaseConfig (class in diluvian.config)
binary_confusion_matrix() (in module diluvian.util)
binary_crossentropy() (in module diluvian.util)
binary_f_score() (in module diluvian.util)
Body (class in diluvian.postprocessing)
BranchNode (class in diluvian.octrees)
build_training_gen() (in module diluvian.training)
build_validation_gen() (in module diluvian.training)
C
callbacks (diluvian.training.DataGenerator attribute)
check_move_neighborhood() (diluvian.regions.Region method)
ClipSubvolumeImageGenerator (class in diluvian.volumes)
compile_network() (in module diluvian.network)
Config (class in diluvian.config)
confusion_f_score() (in module diluvian.util)
ContrastAugmentGenerator (class in diluvian.volumes)
count_leaves() (diluvian.octrees.BranchNode method)
(diluvian.octrees.LeafNode method)
(diluvian.octrees.Node method)
(diluvian.octrees.UniformLeafNode method)
D
data (diluvian.training.DataGenerator attribute)
DataGenerator (class in diluvian.training)
diluvian (module)
diluvian.config (module)
diluvian.diluvian (module)
diluvian.network (module)
diluvian.octrees (module)
diluvian.postprocessing (module)
diluvian.preprocessing (module)
diluvian.regions (module)
diluvian.third_party (module)
diluvian.third_party.multi_gpu (module)
diluvian.training (module)
diluvian.util (module)
diluvian.volumes (module)
DIM (diluvian.volumes.Volume attribute)
DimOrder (class in diluvian.volumes)
downsample() (diluvian.volumes.ImageStackVolume method)
(diluvian.volumes.Volume method)
DownsampledVolume (class in diluvian.volumes)
E
EarlyAbort (class in diluvian.training)
EarlyAbortException
ErodedMaskGenerator (class in diluvian.volumes)
evaluate_volume() (in module diluvian.diluvian)
extend_keras_history() (in module diluvian.util)
F
f_a() (diluvian.volumes.Subvolume method)
fill() (diluvian.regions.Region method)
fill_animation() (diluvian.regions.Region method)
fill_region_with_model() (in module diluvian.diluvian)
fill_render() (diluvian.regions.Region method)
fill_volume_with_model() (in module diluvian.diluvian)
fill_volumes_with_model() (in module diluvian.diluvian)
from_catmaid_stack() (diluvian.volumes.ImageStackVolume static method)
from_subvolume() (diluvian.regions.Region static method)
from_subvolume_generator() (diluvian.regions.Region static method)
from_toml() (diluvian.config.Config method)
(diluvian.volumes.HDF5Volume static method)
fullness() (diluvian.octrees.OctreeVolume method)
G
GaussianNoiseAugmentGenerator (class in diluvian.volumes)
generate_subvolume_bounds() (in module diluvian.diluvian)
GeneratorReset (class in diluvian.training)
GeneratorSubvolumeMetric (class in diluvian.training)
gens (diluvian.training.DataGenerator attribute)
get_block_bounds() (diluvian.regions.Region method)
get_checked_np_key() (diluvian.octrees.OctreeVolume method)
get_child_bounds() (diluvian.octrees.BranchNode method)
get_children_mask() (diluvian.octrees.BranchNode method)
get_color_shader() (in module diluvian.util)
get_epoch_metric() (diluvian.training.MovingTrainingGenerator method)
get_function() (in module diluvian.util)
get_intersection() (diluvian.octrees.Node method)
get_json_state() (diluvian.util.WrappedViewer method)
get_largest_component() (diluvian.postprocessing.Body method)
get_leaf_bounds() (diluvian.octrees.OctreeVolume method)
get_move_priority() (diluvian.regions.Region method)
get_moves() (diluvian.regions.Region method)
get_next_block() (diluvian.regions.Region method)
get_nonzero_aabb() (in module diluvian.util)
get_output_margin() (in module diluvian.training)
get_seeded_component() (diluvian.postprocessing.Body method)
get_size() (diluvian.octrees.Node method)
get_subvolume() (diluvian.volumes.DownsampledVolume method)
(diluvian.volumes.ImageStackVolume method)
(diluvian.volumes.Volume method)
(diluvian.volumes.VolumeView method)
get_viewer() (diluvian.regions.Region method)
get_volume() (diluvian.octrees.Node method)
(diluvian.octrees.OctreeVolume method)
grid_seeds() (in module diluvian.preprocessing)
H
has_seed_in_mask() (diluvian.volumes.Subvolume method)
has_uniform_seed_margin() (diluvian.volumes.Subvolume method)
HDF5Volume (class in diluvian.volumes)
I
image (diluvian.volumes.Subvolume attribute)
image_populator() (diluvian.volumes.ImageStackVolume method)
(diluvian.volumes.SparseWrappedVolume method)
ImageStackVolume (class in diluvian.volumes)
ImageStackVolume.SparseSubvolumeBoundsGenerator (class in diluvian.volumes)
intensity_distance_seeds() (in module diluvian.preprocessing)
is_seed_in_mask() (diluvian.postprocessing.Body method)
iter_leaves() (diluvian.octrees.BranchNode method)
(diluvian.octrees.LeafNode method)
(diluvian.octrees.OctreeVolume method)
iterable_from_csv() (diluvian.volumes.SubvolumeBounds class method)
iterable_to_csv() (diluvian.volumes.SubvolumeBounds class method)
L
label_id (diluvian.volumes.Subvolume attribute)
(diluvian.volumes.SubvolumeBounds attribute)
label_margin (diluvian.volumes.SubvolumeBounds attribute)
label_mask (diluvian.volumes.Subvolume attribute)
label_populator() (diluvian.volumes.SparseWrappedVolume method)
LeafNode (class in diluvian.octrees)
load_model() (in module diluvian.network)
local_coord_to_world() (diluvian.volumes.Volume method)
(diluvian.volumes.VolumeView method)
M
make_flood_fill_network() (in module diluvian.network)
make_flood_fill_unet() (in module diluvian.network)
make_parallel() (in module diluvian.third_party.multi_gpu)
make_prewitt() (in module diluvian.preprocessing)
map_copy() (diluvian.octrees.BranchNode method)
(diluvian.octrees.LeafNode method)
(diluvian.octrees.OctreeVolume method)
(diluvian.octrees.UniformNode method)
mask_bounds (diluvian.volumes.PartitionedVolume attribute)
(diluvian.volumes.Volume attribute)
(diluvian.volumes.VolumeView attribute)
mask_to_output_target() (in module diluvian.regions)
MaskedArtifactAugmentGenerator (class in diluvian.volumes)
MirrorAugmentGenerator (class in diluvian.volumes)
MissingDataAugmentGenerator (class in diluvian.volumes)
ModelConfig (class in diluvian.config)
move_step (diluvian.config.ModelConfig attribute)
MovingTrainingGenerator (class in diluvian.training)
N
NdarrayVolume (class in diluvian.volumes)
NetworkConfig (class in diluvian.config)
Node (class in diluvian.octrees)
O
OctreeVolume (class in diluvian.octrees)
on_epoch_end() (diluvian.training.EarlyAbort method)
(diluvian.training.GeneratorReset method)
(diluvian.training.GeneratorSubvolumeMetric method)
open_in_browser() (diluvian.util.WrappedViewer method)
OptimizerConfig (class in diluvian.config)
P
pad_dims() (in module diluvian.util)
parent_coord_to_world() (diluvian.volumes.DownsampledVolume method)
(diluvian.volumes.PartitionedVolume method)
(diluvian.volumes.VolumeView method)
partition() (diluvian.volumes.Volume method)
partition_volumes() (in module diluvian.volumes)
PartitionedVolume (class in diluvian.volumes)
patch_prediction_copy() (in module diluvian.training)
PermuteAxesAugmentGenerator (class in diluvian.volumes)
plot_history() (in module diluvian.training)
populate_child() (diluvian.octrees.BranchNode method)
pos_in_bounds() (diluvian.regions.Region method)
pos_to_vox() (diluvian.regions.Region method)
PostprocessingConfig (class in diluvian.config)
prediction_metric() (diluvian.regions.Region method)
preprocess_subvolume_generator() (in module diluvian.training)
print_view_prompt() (diluvian.util.WrappedViewer method)
R
Region (class in diluvian.regions)
Region.EarlyFillTermination
RelabelSeedComponentGenerator (class in diluvian.volumes)
remask() (diluvian.regions.Region method)
render_body() (diluvian.regions.Region method)
replace() (diluvian.octrees.Node method)
replace_child() (diluvian.octrees.BranchNode method)
(diluvian.octrees.OctreeVolume method)
reset() (diluvian.training.MovingTrainingGenerator method)
(diluvian.util.Roundrobin method)
(diluvian.volumes.ClipSubvolumeImageGenerator method)
(diluvian.volumes.ErodedMaskGenerator method)
(diluvian.volumes.ImageStackVolume.SparseSubvolumeBoundsGenerator method)
(diluvian.volumes.RelabelSeedComponentGenerator method)
(diluvian.volumes.SubvolumeAugmentGenerator method)
(diluvian.volumes.SubvolumeGenerator method)
(diluvian.volumes.Volume.SubvolumeBoundsGenerator method)
resolution (diluvian.volumes.ImageStackVolume attribute)
Roundrobin (class in diluvian.util)
S
seed (diluvian.volumes.Subvolume attribute)
(diluvian.volumes.SubvolumeBounds attribute)
shape (diluvian.octrees.OctreeVolume attribute)
(diluvian.volumes.ClipSubvolumeImageGenerator attribute)
(diluvian.volumes.DownsampledVolume attribute)
(diluvian.volumes.ErodedMaskGenerator attribute)
(diluvian.volumes.ImageStackVolume.SparseSubvolumeBoundsGenerator attribute)
(diluvian.volumes.PartitionedVolume attribute)
(diluvian.volumes.RelabelSeedComponentGenerator attribute)
(diluvian.volumes.SubvolumeAugmentGenerator attribute)
(diluvian.volumes.SubvolumeGenerator attribute)
(diluvian.volumes.Volume attribute)
(diluvian.volumes.VolumeView attribute)
skeleton_to_swc() (in module diluvian.postprocessing)
skeletonize_component() (in module diluvian.postprocessing)
sparse_wrapper() (diluvian.volumes.Volume method)
SparseWrappedVolume (class in diluvian.volumes)
start (diluvian.volumes.SubvolumeBounds attribute)
steps_per_epoch (diluvian.training.DataGenerator attribute)
stop (diluvian.volumes.SubvolumeBounds attribute)
subv_moves() (diluvian.config.ModelConfig method)
Subvolume (class in diluvian.volumes)
subvolume_bounds_generator() (diluvian.volumes.ImageStackVolume method)
(diluvian.volumes.Volume method)
subvolume_generator() (diluvian.volumes.Volume method)
SubvolumeAugmentGenerator (class in diluvian.volumes)
SubvolumeBounds (class in diluvian.volumes)
SubvolumeGenerator (class in diluvian.volumes)
T
to_body() (diluvian.regions.Region method)
to_memory_volume() (diluvian.volumes.HDF5Volume method)
to_swc() (diluvian.postprocessing.Body method)
to_toml() (diluvian.config.Config method)
train_network() (in module diluvian.training)
training_subv_moves (diluvian.config.ModelConfig attribute)
TrainingConfig (class in diluvian.config)
U
unfilled_copy() (diluvian.regions.Region method)
UniformBranchNode (class in diluvian.octrees)
UniformLeafNode (class in diluvian.octrees)
UniformNode (class in diluvian.octrees)
V
validate_model() (in module diluvian.training)
validation_subv_moves (diluvian.config.ModelConfig attribute)
view_volumes() (in module diluvian.diluvian)
Volume (class in diluvian.volumes)
Volume.SubvolumeBoundsGenerator (class in diluvian.volumes)
VolumeConfig (class in diluvian.config)
VolumeView (class in diluvian.volumes)
vox_to_pos() (diluvian.regions.Region method)
W
world_coord_to_local() (diluvian.volumes.Volume method)
(diluvian.volumes.VolumeView method)
world_coord_to_parent() (diluvian.volumes.DownsampledVolume method)
(diluvian.volumes.PartitionedVolume method)
(diluvian.volumes.VolumeView method)
world_mat_to_local() (diluvian.volumes.Volume method)
(diluvian.volumes.VolumeView method)
WrappedViewer (class in diluvian.util)
write_file() (diluvian.volumes.HDF5Volume static method)
write_keras_history_to_csv() (in module diluvian.util)
X
X (diluvian.volumes.DimOrder attribute)
Y
Y (diluvian.volumes.DimOrder attribute)
Z
Z (diluvian.volumes.DimOrder attribute)
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