Installation¶
Diluvian requires CUDA. For help installing CUDA, follow the
TensorFlow installation instructions
for GPU support.
Note that diluvian will only install TensorFlow CPU during setup, so you will
want to install the version of tensorflow-gpu
diluvian requires:
pip install 'tensorflow-gpu==1.3.0'
You should install diluvian in a virtualenv or similar isolated environment. All other documentation here assumes a a virtualenv has been created and is active.
The neuroglancer PyPI package release is out-of-date, so to avoid spurious console output and other issues you may want to install from source.
To use skeletonization you must install the skeletopyze library into the virtualenv manually. See its documentation for requirements and instructions.
Stable release¶
To install diluvian, run this command in your terminal:
pip install diluvian
This is the preferred method to install diluvian, as it will always install the most recent stable release.
If you don’t have pip installed, this Python installation guide can guide you through the process.
From sources¶
The sources for diluvian can be downloaded from the Github repo.
You can either clone the public repository:
git clone git://github.com/aschampion/diluvian
Or download the tarball:
curl -OL https://github.com/aschampion/diluvian/tarball/master
Once you have a copy of the source, you can install it with:
python setup.py install