diluvian
latest
diluvian
Installation
Usage
Contributing
Contributors
History
diluvian
Docs
»
Index
Edit on GitHub
Index
A
|
B
|
C
|
D
|
E
|
F
|
G
|
H
|
I
|
L
|
M
|
N
|
O
|
P
|
R
|
S
|
T
|
U
|
V
|
W
|
X
|
Y
|
Z
A
add_convolution_module() (in module diluvian.network)
add_mask() (diluvian.regions.Region method)
add_unet_layer() (in module diluvian.network)
augment_subvolume() (diluvian.volumes.ContrastAugmentGenerator method)
(diluvian.volumes.GaussianNoiseAugmentGenerator method)
(diluvian.volumes.MaskedArtifactAugmentGenerator method)
(diluvian.volumes.MirrorAugmentGenerator method)
(diluvian.volumes.MissingDataAugmentGenerator method)
(diluvian.volumes.PermuteAxesAugmentGenerator method)
(diluvian.volumes.SubvolumeAugmentGenerator method)
augment_subvolume_generator() (in module diluvian.training)
B
BaseConfig (class in diluvian.config)
binary_confusion_matrix() (in module diluvian.util)
binary_crossentropy() (in module diluvian.util)
binary_f_score() (in module diluvian.util)
Body (class in diluvian.postprocessing)
BranchNode (class in diluvian.octrees)
build_training_gen() (in module diluvian.training)
build_validation_gen() (in module diluvian.training)
C
callbacks (diluvian.training.DataGenerator attribute)
check_move_neighborhood() (diluvian.regions.Region method)
ClipSubvolumeImageGenerator (class in diluvian.volumes)
compile_network() (in module diluvian.network)
Config (class in diluvian.config)
confusion_f_score() (in module diluvian.util)
ContrastAugmentGenerator (class in diluvian.volumes)
count_leaves() (diluvian.octrees.BranchNode method)
(diluvian.octrees.LeafNode method)
(diluvian.octrees.Node method)
(diluvian.octrees.UniformLeafNode method)
D
data (diluvian.training.DataGenerator attribute)
DataGenerator (class in diluvian.training)
diluvian (module)
diluvian.config (module)
diluvian.diluvian (module)
diluvian.network (module)
diluvian.octrees (module)
diluvian.postprocessing (module)
diluvian.preprocessing (module)
diluvian.regions (module)
diluvian.training (module)
diluvian.util (module)
diluvian.volumes (module)
DIM (diluvian.volumes.Volume attribute)
DimOrder (class in diluvian.volumes)
downsample() (diluvian.volumes.ImageStackVolume method)
(diluvian.volumes.Volume method)
DownsampledVolume (class in diluvian.volumes)
E
EarlyAbort (class in diluvian.training)
EarlyAbortException
ErodedMaskGenerator (class in diluvian.volumes)
evaluate_volume() (in module diluvian.diluvian)
extend_keras_history() (in module diluvian.util)
F
f_a() (diluvian.volumes.Subvolume method)
fill() (diluvian.regions.Region method)
fill_animation() (diluvian.regions.Region method)
fill_region_with_model() (in module diluvian.diluvian)
fill_render() (diluvian.regions.Region method)
fill_volume_with_model() (in module diluvian.diluvian)
fill_volumes_with_model() (in module diluvian.diluvian)
from_catmaid_stack() (diluvian.volumes.ImageStackVolume static method)
from_subvolume() (diluvian.regions.Region static method)
from_subvolume_generator() (diluvian.regions.Region static method)
from_toml() (diluvian.config.Config method)
(diluvian.volumes.HDF5Volume static method)
(diluvian.volumes.ImageStackVolume method)
fullness() (diluvian.octrees.OctreeVolume method)
G
GaussianNoiseAugmentGenerator (class in diluvian.volumes)
generate_subvolume_bounds() (in module diluvian.diluvian)
GeneratorReset (class in diluvian.training)
GeneratorSubvolumeMetric (class in diluvian.training)
gens (diluvian.training.DataGenerator attribute)
get_block_bounds() (diluvian.regions.Region method)
get_checked_np_key() (diluvian.octrees.OctreeVolume method)
get_child_bounds() (diluvian.octrees.BranchNode method)
get_children_mask() (diluvian.octrees.BranchNode method)
get_color_shader() (in module diluvian.util)
get_epoch_metric() (diluvian.training.MovingTrainingGenerator method)
get_function() (in module diluvian.util)
get_intersection() (diluvian.octrees.Node method)
get_json_state() (diluvian.util.WrappedViewer method)
get_largest_component() (diluvian.postprocessing.Body method)
get_leaf_bounds() (diluvian.octrees.OctreeVolume method)
get_move_priority() (diluvian.regions.Region method)
get_moves() (diluvian.regions.Region method)
get_next_block() (diluvian.regions.Region method)
get_nonzero_aabb() (in module diluvian.util)
get_output_margin() (in module diluvian.training)
get_seeded_component() (diluvian.postprocessing.Body method)
get_size() (diluvian.octrees.Node method)
get_subvolume() (diluvian.volumes.DownsampledVolume method)
(diluvian.volumes.ImageStackVolume method)
(diluvian.volumes.Volume method)
(diluvian.volumes.VolumeView method)
get_viewer() (diluvian.regions.Region method)
get_volume() (diluvian.octrees.Node method)
(diluvian.octrees.OctreeVolume method)
grid_seeds() (in module diluvian.preprocessing)
H
has_seed_in_mask() (diluvian.volumes.Subvolume method)
has_uniform_seed_margin() (diluvian.volumes.Subvolume method)
HDF5Volume (class in diluvian.volumes)
I
image (diluvian.volumes.Subvolume attribute)
image_populator() (diluvian.volumes.ImageStackVolume method)
(diluvian.volumes.SparseWrappedVolume method)
ImageStackVolume (class in diluvian.volumes)
ImageStackVolume.SparseSubvolumeBoundsGenerator (class in diluvian.volumes)
intensity_distance_seeds() (in module diluvian.preprocessing)
is_seed_in_mask() (diluvian.postprocessing.Body method)
iter_leaves() (diluvian.octrees.BranchNode method)
(diluvian.octrees.LeafNode method)
(diluvian.octrees.OctreeVolume method)
iterable_from_csv() (diluvian.volumes.SubvolumeBounds class method)
iterable_to_csv() (diluvian.volumes.SubvolumeBounds class method)
L
label_id (diluvian.volumes.Subvolume attribute)
(diluvian.volumes.SubvolumeBounds attribute)
label_margin (diluvian.volumes.SubvolumeBounds attribute)
label_mask (diluvian.volumes.Subvolume attribute)
label_populator() (diluvian.volumes.SparseWrappedVolume method)
LeafNode (class in diluvian.octrees)
load_model() (in module diluvian.network)
local_coord_to_world() (diluvian.volumes.ImageStackVolume method)
(diluvian.volumes.Volume method)
(diluvian.volumes.VolumeView method)
local_to_parent() (diluvian.volumes.DownsampledVolume method)
(diluvian.volumes.PartitionedVolume method)
(diluvian.volumes.VolumeView method)
M
make_flood_fill_network() (in module diluvian.network)
make_flood_fill_unet() (in module diluvian.network)
make_parallel() (in module diluvian.network)
make_prewitt() (in module diluvian.preprocessing)
map_copy() (diluvian.octrees.BranchNode method)
(diluvian.octrees.LeafNode method)
(diluvian.octrees.OctreeVolume method)
(diluvian.octrees.UniformNode method)
mask_bounds (diluvian.volumes.PartitionedVolume attribute)
(diluvian.volumes.Volume attribute)
(diluvian.volumes.VolumeView attribute)
mask_to_output_target() (in module diluvian.regions)
MaskedArtifactAugmentGenerator (class in diluvian.volumes)
MirrorAugmentGenerator (class in diluvian.volumes)
MissingDataAugmentGenerator (class in diluvian.volumes)
ModelConfig (class in diluvian.config)
move_step (diluvian.config.ModelConfig attribute)
MovingTrainingGenerator (class in diluvian.training)
N
NdarrayVolume (class in diluvian.volumes)
NetworkConfig (class in diluvian.config)
Node (class in diluvian.octrees)
O
OctreeVolume (class in diluvian.octrees)
on_epoch_end() (diluvian.training.EarlyAbort method)
(diluvian.training.GeneratorReset method)
(diluvian.training.GeneratorSubvolumeMetric method)
open_in_browser() (diluvian.util.WrappedViewer method)
OptimizerConfig (class in diluvian.config)
P
pad_dims() (in module diluvian.util)
parent_to_local() (diluvian.volumes.DownsampledVolume method)
(diluvian.volumes.PartitionedVolume method)
(diluvian.volumes.VolumeView method)
partition() (diluvian.volumes.Volume method)
partition_volumes() (in module diluvian.volumes)
PartitionedVolume (class in diluvian.volumes)
patch_prediction_copy() (in module diluvian.training)
PermuteAxesAugmentGenerator (class in diluvian.volumes)
plot_history() (in module diluvian.training)
populate_child() (diluvian.octrees.BranchNode method)
pos_in_bounds() (diluvian.regions.Region method)
pos_to_vox() (diluvian.regions.Region method)
PostprocessingConfig (class in diluvian.config)
prediction_metric() (diluvian.regions.Region method)
preprocess_subvolume_generator() (in module diluvian.training)
print_view_prompt() (diluvian.util.WrappedViewer method)
R
real_coord_to_world() (diluvian.volumes.ImageStackVolume method)
Region (class in diluvian.regions)
Region.EarlyFillTermination
RelabelSeedComponentGenerator (class in diluvian.volumes)
remask() (diluvian.regions.Region method)
render_body() (diluvian.regions.Region method)
replace() (diluvian.octrees.Node method)
replace_child() (diluvian.octrees.BranchNode method)
(diluvian.octrees.OctreeVolume method)
reset() (diluvian.training.MovingTrainingGenerator method)
(diluvian.util.Roundrobin method)
(diluvian.volumes.ClipSubvolumeImageGenerator method)
(diluvian.volumes.ErodedMaskGenerator method)
(diluvian.volumes.ImageStackVolume.SparseSubvolumeBoundsGenerator method)
(diluvian.volumes.RelabelSeedComponentGenerator method)
(diluvian.volumes.SubvolumeAugmentGenerator method)
(diluvian.volumes.SubvolumeGenerator method)
(diluvian.volumes.Volume.SubvolumeBoundsGenerator method)
resolution (diluvian.volumes.ImageStackVolume attribute)
Roundrobin (class in diluvian.util)
S
seed (diluvian.volumes.Subvolume attribute)
(diluvian.volumes.SubvolumeBounds attribute)
shape (diluvian.octrees.OctreeVolume attribute)
(diluvian.volumes.ClipSubvolumeImageGenerator attribute)
(diluvian.volumes.DownsampledVolume attribute)
(diluvian.volumes.ErodedMaskGenerator attribute)
(diluvian.volumes.ImageStackVolume.SparseSubvolumeBoundsGenerator attribute)
(diluvian.volumes.PartitionedVolume attribute)
(diluvian.volumes.RelabelSeedComponentGenerator attribute)
(diluvian.volumes.SubvolumeAugmentGenerator attribute)
(diluvian.volumes.SubvolumeGenerator attribute)
(diluvian.volumes.Volume attribute)
(diluvian.volumes.VolumeView attribute)
skeleton_to_swc() (in module diluvian.postprocessing)
skeletonize_component() (in module diluvian.postprocessing)
sparse_wrapper() (diluvian.volumes.Volume method)
SparseWrappedVolume (class in diluvian.volumes)
start (diluvian.volumes.SubvolumeBounds attribute)
steps_per_epoch (diluvian.training.DataGenerator attribute)
stop (diluvian.volumes.SubvolumeBounds attribute)
subv_moves() (diluvian.config.ModelConfig method)
Subvolume (class in diluvian.volumes)
subvolume_bounds_generator() (diluvian.volumes.ImageStackVolume method)
(diluvian.volumes.Volume method)
subvolume_generator() (diluvian.volumes.Volume method)
SubvolumeAugmentGenerator (class in diluvian.volumes)
SubvolumeBounds (class in diluvian.volumes)
SubvolumeGenerator (class in diluvian.volumes)
T
to_body() (diluvian.regions.Region method)
to_memory_volume() (diluvian.volumes.HDF5Volume method)
to_swc() (diluvian.postprocessing.Body method)
to_toml() (diluvian.config.Config method)
train_network() (in module diluvian.training)
training_subv_moves (diluvian.config.ModelConfig attribute)
TrainingConfig (class in diluvian.config)
U
unfilled_copy() (diluvian.regions.Region method)
UniformBranchNode (class in diluvian.octrees)
UniformLeafNode (class in diluvian.octrees)
UniformNode (class in diluvian.octrees)
V
validate_model() (in module diluvian.training)
validation_subv_moves (diluvian.config.ModelConfig attribute)
view_volumes() (in module diluvian.diluvian)
Volume (class in diluvian.volumes)
Volume.SubvolumeBoundsGenerator (class in diluvian.volumes)
VolumeConfig (class in diluvian.config)
VolumeView (class in diluvian.volumes)
vox_to_pos() (diluvian.regions.Region method)
W
world_coord_to_local() (diluvian.volumes.ImageStackVolume method)
(diluvian.volumes.Volume method)
(diluvian.volumes.VolumeView method)
world_coord_to_real() (diluvian.volumes.ImageStackVolume method)
world_mat_to_local() (diluvian.volumes.Volume method)
(diluvian.volumes.VolumeView method)
WrappedViewer (class in diluvian.util)
write_file() (diluvian.volumes.HDF5Volume static method)
write_keras_history_to_csv() (in module diluvian.util)
X
X (diluvian.volumes.DimOrder attribute)
Y
Y (diluvian.volumes.DimOrder attribute)
Z
Z (diluvian.volumes.DimOrder attribute)
Read the Docs
v: latest
Versions
latest
stable
Downloads
pdf
htmlzip
epub
On Read the Docs
Project Home
Builds
Free document hosting provided by
Read the Docs
.